Publications

Below is a list of my scientific publications. Clicking on each card will bring you to a page with an abstract, an embedded paper PDF, and a bunch of useful links. If you cannot access any of the material due to broken links or the disastrous capitalism of modern scientific publishing, please contact me and I'll get you the goods. The fun symbols mean stuff. Equal contribution and corresponding authorship is deonted by * and ⛧, respectively.

2024

hplc-py: A Python Package For Rapid Peak Quantification in Complex Chromatograms

Griffin Chure⛧, Jonas Cremer

Published in Journal of Open Source Software DOI: 10.21105/joss.06270

2024

Quantifying the Daily Harvest of Fermentation Products From the Human Gut Microbiota

Markus Arnoldini, Richa Sharma, Claudia Moresi, Griffin Chure, Julien Chabbey, Emma Slack, Jonas Cremer

preprint available on bioRxiv DOI: 10.1101/2024.01.05.573977

2023

Stringent Control Over Cytoplasmic and Membrane Densities Defines Cell Geometry In Escherichia coli

Griffin Chure, Roshali T. de Silva, Richa Sharma, Michael C. Lanz, Jonas Cremer

preprint available on bioRxiv DOI: 10.1101/2023.10.28.564462

2023

An Optimal Regulation of Fluxes Dictates Microbial Growth In and Out of Steady-State

Griffin Chure⛧, Jonas Cremer⛧

Published in eLife DOI: 10.1101/2022.01.27.477569

2022

Be Prospective, Not Retrospective: A Philosophy for Advancing Reproducibility in Modern Biological Research

Griffin Chure⛧

Published in arXiv DOI: 10.48550/arXiv:2210.02593

2022

Anthroponumbers.org: A Quantitative Database of Human Impacts on Planet Earth

Griffin Chure*,⛧, Rachel A. Banks*, Avi I. Flamholz, Nicholas S. Sarai, Mason Kamb, Ignacio Lopez-Gomez, Yinon M. Bar-On, Ron Milo, Rob Phillips⛧

Published in Patterns DOI: 10.1101/2022.03.04.483053

2021

Fundamental Limits on the Rate of Bacterial Growth and Their Influence on Proteomic Composition†

Nathan Belliveau*, Griffin Chure*, Christina L. Hueschen, Hernan G. Garcia, Jane Kondev, Julie Theriot⛧, Rob Phillips⛧

Published in Cell Systems DOI: 10.1016/j.cels.2021.06.002

2021

The Anthropocene by the Numbers: A Quantitative Snapshot of Humanity's Influence on the Planet

Griffin Chure, Rachel A. Banks, Avi I. Flamholz, Nicholas S. Sarai, Mason Kamb, Ignacio Lopez-Gomez, Yinon M. Bar-On, Ron Milo, Rob Phillips⛧

preprint available on arxiv DOI: arXiv:2101.09620

2020

First-Principles Prediction of the Information Processing Capacity of a Simple Genetic Circuit†

Manuel Razo-Mejia, Sarah Marzen, Griffin Chure, Rachel Taubman, Muir Morrison, Rob Phillips⛧

Published in Physical Review E DOI: 10.1103/PhysRevE.102.022404

2020

Sequence-dependent dynamics of synthetic and endogenous RSSs in V(D)J recombination

Soichi Hirokawa, Grifin Chure, Nathan M. Belliveau, Geoffrey A. Lovely, Michael Anaya, David G. Schatz, David Baltimore, Rob Phillips⛧

Published in Nucleic Acids Research DOI: 10.1093/nar/gkaa418

2020

Theoretical Investigation of a Genetic Switch for Metabolic Adaptation

Kathrin S. Laxhuber, Muir J. Morrison, Griffin Chure, Nathan M. Belliveau, Charlotte Strandkvist, Kyle L. Naughton, Rob Phillips⛧

Published in PLoS ONE DOI: 10.1371/journal.pone.0226453

2019

Physiological Adaptability and Parametric Versatility in a Simple Genetic Circuit.

Griffin Chure, Zofii A. Kaczmarek, Rob Phillips⛧

preprint available on bioRxiv DOI: 10.1101/2019.12.19.878462

2019

Predictive Shifts in Free Energy Couple Mutations to Their Phenotypic Consequences.

Griffin Chure, Manuel Razo-Mejia, Nathan M. Belliveau, Tal Einav, Zofii A. Kaczmarek, Stephanie L. Barnes, Mitchell Lewis, Rob Phillips⛧

Published in PNAS DOI: 10.1073/pnas.1907869116

2019

Figure 1 Theory Meets Figure 2 Experiment In The Study of Gene Expression

Rob Phillips⛧, Nathan M. Belliveau, Griffin Chure, Hernan G. Garcia, Manuel Razo-Mejia, Clarissa Scholes

Published in Annual Reviews of Biophysics DOI: 10.1146/annurev-biophys-052118-115525

2018

Connecting the Dots between Mechanosensitive Channel Abundance, Osmotic Shock, and Survival at Single-Cell Resolution†

Griffin Chure*, Heun Jin Lee*, Akiko Rasmussen, Rob Phillips⛧

Published in Journal of Bacteriology DOI: 10.1128/JB.00460-18

2018

Tuning Transcriptional Regulation Through Signaling: A Predictive Theory of Allosteric Induction

Manuel Razo-Mejia*, Stephanie L. Barnes*, Nathan M. Belliveau*, Griffin Chure*, Tal Einav*, Mitchell Lewis, Rob Phillips⛧

Published in Cell Systems DOI: 10.1016/j.cels.2018.02.004